SRX038644
GSM646454: NHEK CTCF rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
cultured NHEK cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
NHEK

Sequenced DNA Library

library_name
GSM646454: NHEK_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13890069
Reads aligned (%)
62.0
Duplicates removed (%)
11.2
Number of peaks
34463 (qval < 1E-05)

hg19

Number of total reads
13890069
Reads aligned (%)
61.7
Duplicates removed (%)
11.6
Number of peaks
34373 (qval < 1E-05)

Base call quality data from DBCLS SRA