SRX038643
GSM646453: K562 WCE rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
cultured K562 cells
chip antibody
none
cell line
K562

Sequenced DNA Library

library_name
GSM646453: K562_WCE_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10206036
Reads aligned (%)
76.2
Duplicates removed (%)
2.6
Number of peaks
340 (qval < 1E-05)

hg19

Number of total reads
10206036
Reads aligned (%)
75.5
Duplicates removed (%)
3.7
Number of peaks
487 (qval < 1E-05)

Base call quality data from DBCLS SRA