SRX038642
GSM646452: K562 WCE rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
cultured K562 cells
chip antibody
none
cell line
K562

Sequenced DNA Library

library_name
GSM646452: K562_WCE_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17373773
Reads aligned (%)
79.7
Duplicates removed (%)
4.1
Number of peaks
581 (qval < 1E-05)

hg19

Number of total reads
17373773
Reads aligned (%)
79.1
Duplicates removed (%)
5.1
Number of peaks
696 (qval < 1E-05)

Base call quality data from DBCLS SRA