SRX038638
GSM646448: K562 H3K9me3 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
cultured K562 cells
chip antibody
H3K9me3
antibody manufacturer
Abcam
antibody catalog number
ab8898
cell line
K562

Sequenced DNA Library

library_name
GSM646448: K562_H3K9me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21099652
Reads aligned (%)
90.9
Duplicates removed (%)
8.6
Number of peaks
614 (qval < 1E-05)

hg19

Number of total reads
21099652
Reads aligned (%)
89.9
Duplicates removed (%)
9.6
Number of peaks
817 (qval < 1E-05)

Base call quality data from DBCLS SRA