SRX038635
GSM646445: K562 H3K4me3 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
cultured K562 cells
chip antibody
H3K4me3
antibody manufacturer
Millipore
antibody catalog number
07-473
cell line
K562

Sequenced DNA Library

library_name
GSM646445: K562_H3K4me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14782249
Reads aligned (%)
65.2
Duplicates removed (%)
8.4
Number of peaks
16652 (qval < 1E-05)

hg19

Number of total reads
14782249
Reads aligned (%)
64.9
Duplicates removed (%)
8.9
Number of peaks
16591 (qval < 1E-05)

Base call quality data from DBCLS SRA