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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX038623
GSM646433: K562 CTCF rep2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
source_name
cultured K562 cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
K562
Sequenced DNA Library
library_name
GSM646433: K562_CTCF_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
16448282
Reads aligned (%)
64.8
Duplicates removed (%)
13.5
Number of peaks
38944 (qval < 1E-05)
hg38
Number of total reads
16448282
Reads aligned (%)
65.6
Duplicates removed (%)
12.9
Number of peaks
39150 (qval < 1E-05)
Base call quality data from
DBCLS SRA