SRX038623
GSM646433: K562 CTCF rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
cultured K562 cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
K562

Sequenced DNA Library

library_name
GSM646433: K562_CTCF_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16448282
Reads aligned (%)
75.3
Duplicates removed (%)
12.9
Number of peaks
39150 (qval < 1E-05)

hg19

Number of total reads
16448282
Reads aligned (%)
74.9
Duplicates removed (%)
13.5
Number of peaks
38944 (qval < 1E-05)

Base call quality data from DBCLS SRA