SRX038615
GSM646425: Huvec H3K4me3 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HUVEC cells
chip antibody
H3K4me3
antibody manufacturer
Millipore
antibody catalog number
07-473
cell line
HUVEC

Sequenced DNA Library

library_name
GSM646425: Huvec_H3K4me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27879141
Reads aligned (%)
46.0
Duplicates removed (%)
10.2
Number of peaks
24471 (qval < 1E-05)

hg19

Number of total reads
27879141
Reads aligned (%)
45.7
Duplicates removed (%)
10.7
Number of peaks
24392 (qval < 1E-05)

Base call quality data from DBCLS SRA