SRX038613
GSM646423: Huvec H3K4me2 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HUVEC cells
chip antibody
H3K4me2
antibody manufacturer
Abcam
antibody catalog number
ab7766
cell line
HUVEC

Sequenced DNA Library

library_name
GSM646423: Huvec_H3K4me2_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28188976
Reads aligned (%)
45.5
Duplicates removed (%)
7.4
Number of peaks
37221 (qval < 1E-05)

hg19

Number of total reads
28188976
Reads aligned (%)
45.2
Duplicates removed (%)
7.7
Number of peaks
37034 (qval < 1E-05)

Base call quality data from DBCLS SRA