Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HUVEC cells
chip antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
cell line
HUVEC

Sequenced DNA Library

library_name
GSM646420: Huvec_H3K4me1_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
23042823
Reads aligned (%)
63.6
Duplicates removed (%)
7.0
Number of peaks
26774 (qval < 1E-05)

hg19

Number of total reads
23042823
Reads aligned (%)
63.3
Duplicates removed (%)
7.4
Number of peaks
26658 (qval < 1E-05)

Base call quality data from DBCLS SRA