SRX038606
GSM646416: Huvec H3K27me3 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HUVEC cells
chip antibody
H3K27me3
antibody manufacturer
Millipore
antibody catalog number
07-449
cell line
HUVEC

Sequenced DNA Library

library_name
GSM646416: Huvec_H3K27me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16747750
Reads aligned (%)
72.5
Duplicates removed (%)
6.5
Number of peaks
826 (qval < 1E-05)

hg19

Number of total reads
16747750
Reads aligned (%)
72.1
Duplicates removed (%)
7.1
Number of peaks
861 (qval < 1E-05)

Base call quality data from DBCLS SRA