SRX038605
GSM646415: Huvec H3K27ac rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HUVEC cells
chip antibody
H3K27ac
antibody manufacturer
Abcam
antibody catalog number
ab4729
cell line
HUVEC

Sequenced DNA Library

library_name
GSM646415: Huvec_H3K27ac_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22400279
Reads aligned (%)
57.2
Duplicates removed (%)
20.3
Number of peaks
27544 (qval < 1E-05)

hg19

Number of total reads
22400279
Reads aligned (%)
56.9
Duplicates removed (%)
20.5
Number of peaks
27443 (qval < 1E-05)

Base call quality data from DBCLS SRA