SRX038602
GSM646412: Huvec CTCF rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HUVEC cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
HUVEC

Sequenced DNA Library

library_name
GSM646412: Huvec_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
16733007
Reads aligned (%)
57.7
Duplicates removed (%)
29.4
Number of peaks
27267 (qval < 1E-05)

hg38

Number of total reads
16733007
Reads aligned (%)
58.0
Duplicates removed (%)
28.9
Number of peaks
27371 (qval < 1E-05)

Base call quality data from DBCLS SRA