SRX038601
GSM646411: HSMM WCE rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
HSMM
Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by original data submitter

Sample

source_name
cultured HSMM cells
chip antibody
none
cell line
HSMM

Sequenced DNA Library

library_name
GSM646411: HSMM_WCE_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18041392
Reads aligned (%)
56.8
Duplicates removed (%)
26.8
Number of peaks
592 (qval < 1E-05)

hg19

Number of total reads
18041392
Reads aligned (%)
56.1
Duplicates removed (%)
28.1
Number of peaks
730 (qval < 1E-05)

Base call quality data from DBCLS SRA