Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
HSMM
Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by original data submitter

Sample

source_name
cultured HSMM cells
chip antibody
none
cell line
HSMM

Sequenced DNA Library

library_name
GSM646410: HSMM_WCE_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
15959974
Reads aligned (%)
87.0
Duplicates removed (%)
2.5
Number of peaks
586 (qval < 1E-05)

hg19

Number of total reads
15959974
Reads aligned (%)
86.2
Duplicates removed (%)
3.9
Number of peaks
815 (qval < 1E-05)

Base call quality data from DBCLS SRA