Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Muscle
Cell type
HSMM
Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by original data submitter

Sample

source_name
cultured HSMM cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
HSMM

Sequenced DNA Library

library_name
GSM646393: HSMM_CTCF_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
22198947
Reads aligned (%)
43.3
Duplicates removed (%)
16.9
Number of peaks
47424 (qval < 1E-05)

hg38

Number of total reads
22198947
Reads aligned (%)
43.8
Duplicates removed (%)
16.5
Number of peaks
47733 (qval < 1E-05)

Base call quality data from DBCLS SRA