SRX038581
GSM646391: HMEC WCE rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HMEC cells
chip antibody
none
cell line
HMEC

Sequenced DNA Library

library_name
GSM646391: HMEC_WCE_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19981079
Reads aligned (%)
68.5
Duplicates removed (%)
2.1
Number of peaks
508 (qval < 1E-05)

hg19

Number of total reads
19981079
Reads aligned (%)
67.6
Duplicates removed (%)
3.1
Number of peaks
629 (qval < 1E-05)

Base call quality data from DBCLS SRA