SRX038580
GSM646390: HMEC WCE rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HMEC cells
chip antibody
none
cell line
HMEC

Sequenced DNA Library

library_name
GSM646390: HMEC_WCE_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10240514
Reads aligned (%)
58.4
Duplicates removed (%)
6.3
Number of peaks
202 (qval < 1E-05)

hg19

Number of total reads
10240514
Reads aligned (%)
57.7
Duplicates removed (%)
7.0
Number of peaks
195 (qval < 1E-05)

Base call quality data from DBCLS SRA