SRX038575
GSM646385: HMEC H3K4me3 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HMEC cells
chip antibody
H3K4me3
antibody manufacturer
Millipore
antibody catalog number
07-473
cell line
HMEC

Sequenced DNA Library

library_name
GSM646385: HMEC_H3K4me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24397387
Reads aligned (%)
48.6
Duplicates removed (%)
4.8
Number of peaks
14109 (qval < 1E-05)

hg19

Number of total reads
24397387
Reads aligned (%)
48.0
Duplicates removed (%)
5.6
Number of peaks
14123 (qval < 1E-05)

Base call quality data from DBCLS SRA