SRX038562
GSM646372: HMEC CTCF rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HMEC cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
HMEC

Sequenced DNA Library

library_name
GSM646372: HMEC_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9095437
Reads aligned (%)
79.8
Duplicates removed (%)
11.7
Number of peaks
34300 (qval < 1E-05)

hg19

Number of total reads
9095437
Reads aligned (%)
79.2
Duplicates removed (%)
12.3
Number of peaks
34245 (qval < 1E-05)

Base call quality data from DBCLS SRA