SRX038561
GSM646371: HepG2 WCE rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
cultured HepG2 cells
chip antibody
none
cell line
HepG2

Sequenced DNA Library

library_name
GSM646371: HepG2_WCE_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2391852
Reads aligned (%)
61.3
Duplicates removed (%)
0.8
Number of peaks
41 (qval < 1E-05)

hg19

Number of total reads
2391852
Reads aligned (%)
59.7
Duplicates removed (%)
1.0
Number of peaks
30 (qval < 1E-05)

Base call quality data from DBCLS SRA