Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
cultured HepG2 cells
chip antibody
H3K9ac
antibody manufacturer
Abcam
antibody catalog number
ab4441
cell line
HepG2

Sequenced DNA Library

library_name
GSM646366: HepG2_H3K9ac_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
8678604
Reads aligned (%)
90.8
Duplicates removed (%)
16.9
Number of peaks
14631 (qval < 1E-05)

hg19

Number of total reads
8678604
Reads aligned (%)
90.5
Duplicates removed (%)
17.1
Number of peaks
14648 (qval < 1E-05)

Base call quality data from DBCLS SRA