SRX038554
GSM646364: HepG2 H3K4me3 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
cultured HepG2 cells
chip antibody
H3K4me3
antibody manufacturer
Millipore
antibody catalog number
07-473
cell line
HepG2

Sequenced DNA Library

library_name
GSM646364: HepG2_H3K4me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11600046
Reads aligned (%)
92.5
Duplicates removed (%)
4.2
Number of peaks
23389 (qval < 1E-05)

hg19

Number of total reads
11600046
Reads aligned (%)
91.9
Duplicates removed (%)
4.6
Number of peaks
23386 (qval < 1E-05)

Base call quality data from DBCLS SRA