SRX038543
GSM646353: HepG2 CTCF rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
cultured HepG2 cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
HepG2

Sequenced DNA Library

library_name
GSM646353: HepG2_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20744974
Reads aligned (%)
66.8
Duplicates removed (%)
6.3
Number of peaks
43697 (qval < 1E-05)

hg19

Number of total reads
20744974
Reads aligned (%)
66.2
Duplicates removed (%)
7.0
Number of peaks
43613 (qval < 1E-05)

Base call quality data from DBCLS SRA