Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
none
cell line
H1

Sequenced DNA Library

library_name
GSM646352: H1_WCE_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
16581567
Reads aligned (%)
39.6
Duplicates removed (%)
1.7
Number of peaks
376 (qval < 1E-05)

hg19

Number of total reads
16581567
Reads aligned (%)
39.0
Duplicates removed (%)
2.2
Number of peaks
393 (qval < 1E-05)

Base call quality data from DBCLS SRA