SRX038541
GSM646351: H1 WCE rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
none
cell line
H1

Sequenced DNA Library

library_name
GSM646351: H1_WCE_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13876810
Reads aligned (%)
92.1
Duplicates removed (%)
4.3
Number of peaks
497 (qval < 1E-05)

hg19

Number of total reads
13876810
Reads aligned (%)
91.3
Duplicates removed (%)
5.2
Number of peaks
717 (qval < 1E-05)

Base call quality data from DBCLS SRA