SRX038539
GSM646349: H1 H4K20me1 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
H4K20me1
antibody manufacturer
Abcam
antibody catalog number
ab9051
cell line
H1

Sequenced DNA Library

library_name
GSM646349: H1_H4K20me1_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21528170
Reads aligned (%)
80.2
Duplicates removed (%)
11.9
Number of peaks
649 (qval < 1E-05)

hg19

Number of total reads
21528170
Reads aligned (%)
79.6
Duplicates removed (%)
12.7
Number of peaks
814 (qval < 1E-05)

Base call quality data from DBCLS SRA