SRX038535
GSM646345: H1 H3K4me3 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
H3K4me3
antibody manufacturer
Millipore
antibody catalog number
07-473
cell line
H1

Sequenced DNA Library

library_name
GSM646345: H1_H3K4me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7990744
Reads aligned (%)
91.0
Duplicates removed (%)
3.8
Number of peaks
20661 (qval < 1E-05)

hg19

Number of total reads
7990744
Reads aligned (%)
90.5
Duplicates removed (%)
4.2
Number of peaks
20603 (qval < 1E-05)

Base call quality data from DBCLS SRA