SRX038532
GSM646342: H1 H3K4me1 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
cell line
H1

Sequenced DNA Library

library_name
GSM646342: H1_H3K4me1_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24020327
Reads aligned (%)
80.4
Duplicates removed (%)
5.6
Number of peaks
783 (qval < 1E-05)

hg19

Number of total reads
24020327
Reads aligned (%)
80.0
Duplicates removed (%)
6.1
Number of peaks
782 (qval < 1E-05)

Base call quality data from DBCLS SRA