SRX038531
GSM646341: H1 H3K4me1 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
cell line
H1

Sequenced DNA Library

library_name
GSM646341: H1_H3K4me1_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11240266
Reads aligned (%)
91.7
Duplicates removed (%)
8.5
Number of peaks
147 (qval < 1E-05)

hg19

Number of total reads
11240266
Reads aligned (%)
91.2
Duplicates removed (%)
9.1
Number of peaks
186 (qval < 1E-05)

Base call quality data from DBCLS SRA