SRX038529
GSM646339: H1 H3K36me3 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
H3K36me3
antibody manufacturer
Abcam
antibody catalog number
ab9050
cell line
H1

Sequenced DNA Library

library_name
GSM646339: H1_H3K36me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24086746
Reads aligned (%)
63.5
Duplicates removed (%)
4.8
Number of peaks
294 (qval < 1E-05)

hg38

Number of total reads
24086746
Reads aligned (%)
64.1
Duplicates removed (%)
3.8
Number of peaks
300 (qval < 1E-05)

Base call quality data from DBCLS SRA