SRX038524
GSM646334: H1 CTCF rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
H1

Sequenced DNA Library

library_name
GSM646334: H1_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24602206
Reads aligned (%)
51.9
Duplicates removed (%)
17.9
Number of peaks
39297 (qval < 1E-05)

hg38

Number of total reads
24602206
Reads aligned (%)
53.1
Duplicates removed (%)
16.8
Number of peaks
38620 (qval < 1E-05)

Base call quality data from DBCLS SRA