Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
cultured GM12878 cells
chip antibody
H3K9ac
antibody manufacturer
Abcam
antibody catalog number
ab4441
cell line
GM12878

Sequenced DNA Library

library_name
GSM646329: GM12878_H3K9ac_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
11718504
Reads aligned (%)
68.0
Duplicates removed (%)
3.1
Number of peaks
8968 (qval < 1E-05)

hg19

Number of total reads
11718504
Reads aligned (%)
67.5
Duplicates removed (%)
3.4
Number of peaks
9154 (qval < 1E-05)

Base call quality data from DBCLS SRA