Curated Sample Data


Genome
hg19
Antigen Class
Histone
Antigen
H3K4me2
Cell type Class
Blood
Cell type
GM12878

Cell type information


Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by Original Data Submitter


source_name
cultured GM12878 cells
chip antibody
H3K4me2
antibody manufacturer
Abcam
antibody catalog number
ab7766
cell line
GM12878

Metadata from Sequence Read Archive

Library Description


library_name
GSM646325: GM12878_H3K4me2_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
8717378
Reads aligned (%)
82.3
Duplicates removed (%)
3.2
Number of peaks
5838 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA