Antigen

Antigen Class

Histone

Antigen

H3K4me2

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

cultured GM12878 cells

chip antibody

H3K4me2

antibody manufacturer

Abcam

antibody catalog number

ab7766

cell line

GM12878

Sequenced DNA Library

library_name

GSM646325: GM12878_H3K4me2_rep2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

8717378

Reads aligned (%)

82.7

Duplicates removed (%)

3.0

Number of peaks

5743 (qval < 1E-05)

hg19

Number of total reads

8717378

Reads aligned (%)

82.3

Duplicates removed (%)

3.2

Number of peaks

5838 (qval < 1E-05)