Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
cultured GM12878 cells
chip antibody
H3K27ac
antibody manufacturer
Abcam
antibody catalog number
ab4729
cell line
GM12878

Sequenced DNA Library

library_name
GSM646316: GM12878_H3K27ac_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
27005602
Reads aligned (%)
39.3
Duplicates removed (%)
10.7
Number of peaks
20732 (qval < 1E-05)

hg19

Number of total reads
27005602
Reads aligned (%)
39.1
Duplicates removed (%)
10.8
Number of peaks
21224 (qval < 1E-05)

Base call quality data from DBCLS SRA