Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

cultured GM12878 cells

chip antibody

CTCF

antibody manufacturer

Millipore

antibody catalog number

07-729

cell line

GM12878

Sequenced DNA Library

library_name

GSM646315: GM12878_CTCF_rep2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

11739160

Reads aligned (%)

73.2

Duplicates removed (%)

5.1

Number of peaks

18131 (qval < 1E-05)

hg19

Number of total reads

11739160

Reads aligned (%)

72.6

Duplicates removed (%)

5.8

Number of peaks

18728 (qval < 1E-05)