Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
cultured GM12878 cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
GM12878

Sequenced DNA Library

library_name
GSM646315: GM12878_CTCF_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
11739160
Reads aligned (%)
68.4
Duplicates removed (%)
5.8
Number of peaks
18728 (qval < 1E-05)

hg38

Number of total reads
11739160
Reads aligned (%)
69.5
Duplicates removed (%)
5.1
Number of peaks
18131 (qval < 1E-05)

Base call quality data from DBCLS SRA