Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
cultured GM12878 cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
GM12878

Sequenced DNA Library

library_name
GSM646314: GM12878_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
17949455
Reads aligned (%)
53.9
Duplicates removed (%)
15.2
Number of peaks
31332 (qval < 1E-05)

hg38

Number of total reads
17949455
Reads aligned (%)
55.0
Duplicates removed (%)
14.6
Number of peaks
30154 (qval < 1E-05)

Base call quality data from DBCLS SRA