Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

cultured GM12878 cells

chip antibody

CTCF

antibody manufacturer

Millipore

antibody catalog number

07-729

cell line

GM12878

Sequenced DNA Library

library_name

GSM646314: GM12878_CTCF_rep1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

17949455

Reads aligned (%)

64.4

Duplicates removed (%)

14.6

Number of peaks

30154 (qval < 1E-05)

hg19

Number of total reads

17949455

Reads aligned (%)

63.5

Duplicates removed (%)

15.2

Number of peaks

31332 (qval < 1E-05)