Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver cells
strain
C57BL/6
tissue
Liver
chip antibody
none

Sequenced DNA Library

library_name
GSM654892: Input_DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
29669202
Reads aligned (%)
97.8
Duplicates removed (%)
22.5
Number of peaks
555 (qval < 1E-05)

mm9

Number of total reads
29669202
Reads aligned (%)
97.5
Duplicates removed (%)
22.5
Number of peaks
695 (qval < 1E-05)

Base call quality data from DBCLS SRA