SRX037937
GSM651543: CD36 shBrg1 CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
CD36+
NA
NA

Attributes by original data submitter

Sample

source_name
CD36
condition
BRG1 RNAi KD
antibody
Anti-CTCF
vendor
Upstate

Sequenced DNA Library

library_name
GSM651543: CD36_shBrg1_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12458042
Reads aligned (%)
88.9
Duplicates removed (%)
16.4
Number of peaks
26440 (qval < 1E-05)

hg19

Number of total reads
12458042
Reads aligned (%)
88.3
Duplicates removed (%)
16.9
Number of peaks
26323 (qval < 1E-05)

Base call quality data from DBCLS SRA