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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: CD36+
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX037936
GSM651542: CD36 shLuc CTCF
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Blood
Cell type
CD36+
NA
NA
Attributes by original data submitter
Sample
source_name
CD36
condition
BRG1 KD shLuc control
antibody
Anti-CTCF
vendor
Upstate
Sequenced DNA Library
library_name
GSM651542: CD36_shLuc_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
13089019
Reads aligned (%)
73.0
Duplicates removed (%)
16.5
Number of peaks
30563 (qval < 1E-05)
hg38
Number of total reads
13089019
Reads aligned (%)
73.9
Duplicates removed (%)
16.0
Number of peaks
30681 (qval < 1E-05)
Base call quality data from
DBCLS SRA