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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NFYA
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX037418
GSM648587: K562-NFYA
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NFYA
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
source_name
Chromatin IP with NFYA Ab
cell line
K562
antibody
NFYA (Santa Cruz H-209 sc-10779, Lot D2408)
Sequenced DNA Library
library_name
GSM648587: K562-NFYA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
13773273
Reads aligned (%)
97.8
Duplicates removed (%)
19.6
Number of peaks
14945 (qval < 1E-05)
hg19
Number of total reads
13773273
Reads aligned (%)
97.4
Duplicates removed (%)
20.1
Number of peaks
15031 (qval < 1E-05)
Base call quality data from
DBCLS SRA