SRX037417
GSM648586: K562-PRAME

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PRAME

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Chromatin IP with PRAME serum
cell line
K562
antibody
PRAME (V27/S6)

Sequenced DNA Library

library_name
GSM648586: K562-PRAME
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
8268089
Reads aligned (%)
97.0
Duplicates removed (%)
11.4
Number of peaks
9072 (qval < 1E-05)

hg38

Number of total reads
8268089
Reads aligned (%)
97.5
Duplicates removed (%)
11.3
Number of peaks
9082 (qval < 1E-05)

Base call quality data from DBCLS SRA