Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
GM06990
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
GM06990
biomaterial_provider
Coriell
cell
GM06990
cell organism
Human
cell description
lymphoblastoid (CEPH)
cell karyotype
relatively normal
cell lineage
CEPH/Utah - European Caucasion; Epstein-Barr Virus
cell sex
F

Sequenced DNA Library

library_name
GSM646568: Stam_GM06990
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
238189351
Reads aligned (%)
84.8
Duplicates removed (%)
56.0
Number of peaks
65289 (qval < 1E-05)

hg19

Number of total reads
238189351
Reads aligned (%)
72.7
Duplicates removed (%)
50.4
Number of peaks
68777 (qval < 1E-05)

Base call quality data from DBCLS SRA