SRX037114
GSM646565: Stam HCPEpiC

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
HCPEpiC
Tissue
epithelium
Lineage
ectoderm
Description
choroid plexus epithelial cells

Attributes by original data submitter

Sample

source_name
HCPEpiC
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
HCPEpiC
cell organism
human
cell description
choroid plexus epithelial cells
cell lineage
ectoderm
cell sex
U
labversion
lmax-v1.0

Sequenced DNA Library

library_name
GSM646565: Stam_HCPEpiC
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
305511987
Reads aligned (%)
97.0
Duplicates removed (%)
56.9
Number of peaks
285314 (qval < 1E-05)

hg19

Number of total reads
305511987
Reads aligned (%)
96.5
Duplicates removed (%)
57.9
Number of peaks
291224 (qval < 1E-05)

Base call quality data from DBCLS SRA