Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
cell
HepG2
cell organism
Human
cell description
liver carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M

Sequenced DNA Library

library_name
GSM646559: Stam_HepG2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
248320583
Reads aligned (%)
90.4
Duplicates removed (%)
52.9
Number of peaks
71313 (qval < 1E-05)

hg19

Number of total reads
248320583
Reads aligned (%)
89.7
Duplicates removed (%)
54.5
Number of peaks
73094 (qval < 1E-05)

Base call quality data from DBCLS SRA