SRX037081
GSM644990: H3K4me3 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
NCCIT, H3K4me3 ChIP
cell line
NCCIT
cell type
embryonic carcinoma cells
chip antibody
anti-H3K4me3
antibody vendor
Abcam
antibody catalog number
ab8580

Sequenced DNA Library

library_name
GSM644990: H3K4me3_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19684335
Reads aligned (%)
80.6
Duplicates removed (%)
9.9
Number of peaks
35555 (qval < 1E-05)

hg19

Number of total reads
19684335
Reads aligned (%)
80.3
Duplicates removed (%)
10.4
Number of peaks
35390 (qval < 1E-05)

Base call quality data from DBCLS SRA