Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOA1

Cell type

Cell type Class
Bone
Cell type
U2OS
Tissue
bone
Lineage
mesoderm
Description
osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590)

Attributes by original data submitter

Sample

source_name
Cell line
strain
U2OS-ERalpha (stable)
antibody
anti-SRC1 M341

Sequenced DNA Library

library_name
GSM641431: ChIP_SRC1_Veh_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
12336056
Reads aligned (%)
95.3
Duplicates removed (%)
15.7
Number of peaks
568 (qval < 1E-05)

hg38

Number of total reads
12336056
Reads aligned (%)
96.2
Duplicates removed (%)
14.6
Number of peaks
224 (qval < 1E-05)

Base call quality data from DBCLS SRA