SRX036563
GSM640421: ER control

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Tamoxifen resistance MCF7 cell line
cell type
Breast cancer cell
cell line
MCF7, tamoxifen resistance
agent
untreated
chip antibody
ER
vendor
Santa Cruz Biotechnology
catalog number
sc-8005

Sequenced DNA Library

library_name
GSM640421: ER control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
14075733
Reads aligned (%)
54.1
Duplicates removed (%)
17.7
Number of peaks
133 (qval < 1E-05)

hg38

Number of total reads
14075733
Reads aligned (%)
54.9
Duplicates removed (%)
16.5
Number of peaks
101 (qval < 1E-05)

Base call quality data from DBCLS SRA