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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: Breast cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX036554
GSM641821: H3K27me3 sample2 CD24+
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Breast
Cell type
Breast cells
NA
NA
Attributes by original data submitter
Sample
source_name
reduction mammoplasty
tissue
breast
cell type
epithelial cell
disease state
normal
cell marker
CD24+
cell purification antibody vendor
BD-Pharmingen
cell purification antibody catalog number
555426
chip antibody
H3K27me3
antibody vendor
Millipore
antibody catalog number
07-449
Sequenced DNA Library
library_name
GSM641821: H3K27me3_sample2_CD24+
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
10000097
Reads aligned (%)
96.4
Duplicates removed (%)
4.5
Number of peaks
81 (qval < 1E-05)
hg19
Number of total reads
10000097
Reads aligned (%)
95.7
Duplicates removed (%)
5.1
Number of peaks
106 (qval < 1E-05)
Base call quality data from
DBCLS SRA