Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Breast
Cell type
Breast cells
NA
NA

Attributes by original data submitter

Sample

source_name
reduction mammoplasty
tissue
breast
cell type
epithelial cell
disease state
normal
cell marker
CD24+
cell purification antibody vendor
BD-Pharmingen
cell purification antibody catalog number
555426
chip antibody
H3K27me3
antibody vendor
Millipore
antibody catalog number
07-449

Sequenced DNA Library

library_name
GSM641821: H3K27me3_sample2_CD24+
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
10000097
Reads aligned (%)
96.4
Duplicates removed (%)
4.5
Number of peaks
81 (qval < 1E-05)

hg19

Number of total reads
10000097
Reads aligned (%)
95.7
Duplicates removed (%)
5.1
Number of peaks
106 (qval < 1E-05)

Base call quality data from DBCLS SRA