SRX036549
GSM641816: H3K27me3 sample1 CD24+

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Breast
Cell type
Breast cells
NA
NA

Attributes by original data submitter

Sample

source_name
reduction mammoplasty
tissue
breast
cell type
epithelial cell
disease state
normal
cell marker
CD24+
cell purification antibody vendor
BD-Pharmingen
cell purification antibody catalog number
555426
chip antibody
H3K27me3
antibody vendor
Millipore
antibody catalog number
07-449

Sequenced DNA Library

library_name
GSM641816: H3K27me3_sample1_CD24+
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10856668
Reads aligned (%)
96.3
Duplicates removed (%)
6.9
Number of peaks
139 (qval < 1E-05)

hg19

Number of total reads
10856668
Reads aligned (%)
95.6
Duplicates removed (%)
7.7
Number of peaks
420 (qval < 1E-05)

Base call quality data from DBCLS SRA