SRX036548
GSM641815: Input sample1 CD44+

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Breast cells
NA
NA

Attributes by original data submitter

Sample

source_name
reduction mammoplasty
tissue
breast
cell type
epithelial cell
disease state
normal
cell marker
CD44+
cell purification antibody vendor
BD-Pharmingen
cell purification antibody catalog number
550988
chip antibody
none

Sequenced DNA Library

library_name
GSM641815: Input_sample1_CD44+
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26838858
Reads aligned (%)
37.7
Duplicates removed (%)
1.8
Number of peaks
309 (qval < 1E-05)

hg19

Number of total reads
26838858
Reads aligned (%)
37.5
Duplicates removed (%)
2.5
Number of peaks
536 (qval < 1E-05)

Base call quality data from DBCLS SRA